Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs911541 chr10:101433392 A/G 1.97E-5 178 24.17 28.3 6.1 KM Plot
PCPG rs912467 chr10:50594368 T/G 4.44E-6 174 24.53 34.93 25.17 KM Plot
PCPG rs913859 chr1:153620086 A/G 0.000353 178 5.68 27.27 25.17 KM Plot
PCPG rs920556 chr2:176189259 A/G 0.000121 177 25.4 28.95 6.62 KM Plot
PCPG rs921153 chr2:61563408 G/A 0.000474 177 24.1 30.18 17.85 KM Plot
PCPG rs925725 chr3:80567282 C/A 6.03E-5 178 19.53 24.03 27.23 KM Plot
PCPG rs925728 chr3:80570649 C/T 4.16E-5 178 19.87 23.53 27.23 KM Plot
PCPG rs925729 chr3:80570653 T/A 4.16E-5 178 19.87 23.53 27.23 KM Plot
PCPG rs9282681 chr16:89805914 T/C 0.000188 175 25.87 20.2 36.37 KM Plot
PCPG rs9289198 chr3:122277160 G/T 9.09E-5 175 25 25.97 10.3 KM Plot
PCPG rs9289199 chr3:122277172 G/A 9.09E-5 175 25 25.97 10.3 KM Plot
PCPG rs9291739 chr5:50608685 G/A 7.07E-5 176 25.28 24.62 31.35 KM Plot
PCPG rs9295697 chr6:26558531 T/C 7.27E-7 176 10.68 32.6 24.53 KM Plot
PCPG rs930177 chr2:236194008 A/G 2.27E-7 175 25.97 25.05 3.07 KM Plot
PCPG rs9315458 chr13:37544226 C/T 0.000337 176 4.17 24.17 25.87 KM Plot